Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs11906259 chr20:16645825 T/G 7.11E-5 288 20.93 31.83 10.17 KM Plot
CESC rs11908095 chr20:16645826 C/A 7.11E-5 288 20.93 31.83 10.17 KM Plot
CESC rs11929238 chr3:161045937 A/T 9.95E-6 297 26.27 20.38 19.05 KM Plot
CESC rs12034948 chr1:4910371 A/G 2.81E-8 299 21.85 20.43 4.8 KM Plot
CESC rs12107159 chr3:149466594 T/G 7.13E-5 292 21.73 16.62 11.6 KM Plot
CESC rs12186366 chr5:96088850 A/G 3.87E-6 295 21.2 24.53 5.1 KM Plot
CESC rs12261510 chr10:88237673 A/G 1.6E-14 297 3.33 24.6 21.17 KM Plot
CESC rs12360549 chr11:33074798 C/T 9.07E-7 295 21.73 24.9 1.67 KM Plot
CESC rs12366195 chr11:33079951 G/C 7.47E-7 296 21.85 21.07 1.67 KM Plot
CESC rs12407116 chr1:112325128 G/A 0 294 21.27 20.7 4.07 KM Plot
CESC rs12412226 chr10:81735288 C/T 4.15E-9 298 25.17 16.47 2.62 KM Plot
CESC rs12412257 chr10:81729603 C/T 4.15E-9 298 25.17 16.47 2.62 KM Plot
CESC rs12414096 chr10:81713629 A/G 4.01E-9 297 25.17 16.42 2.62 KM Plot
CESC rs12416493 chr10:81734921 G/A 4.15E-9 298 25.17 16.47 2.62 KM Plot
CESC rs12446667 chr16:67773114 C/T 3.96E-6 286 21.07 26.32 16.87 KM Plot